CDS

Accession Number TCMCG006C94305
gbkey CDS
Protein Id XP_013675650.1
Location complement(join(253893..254444,254887..255084,255245..255628))
Gene LOC106380438
GeneID 106380438
Organism Brassica napus

Protein

Length 377aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013820196.2
Definition cold shock protein 1 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category O
Description Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03000        [VIEW IN KEGG]
KEGG_ko ko:K09250        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003916        [VIEW IN EMBL-EBI]
GO:0003917        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006265        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016605        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGAAAAGCACGATTCAGGTCGAAGAGCTCGACGAATCTGATGATTTCCTTCTCGAACTCGCCGCTATCGAAGCGGAAGCAGAAGCGGCGGCGAAACGCCCTAAGGTCGCTGCCGTCCCGGAGGGACCTTACATGGCGGCTCTAAAGGGAAGCAAGAGCGAGCAATGGCAGCTGAATCCGCTCAATCCCGCCTCCAAATCTCGCGGCGGTTTTCAAGGCGCCTCCGTGAATTCGAATCCGGCTGGAAGTTATGGATCGGAGGCGGGGGAGCAGGATTTTCCGGAGAAGAAGTGTCCATGTGGAAATGGTGTGTGTTCGATTCTGACGTCGAACACGCAGAAGAACCCAGGCCGAAAATTCTACAAGTGCCCTAATAGAGAGGAAAACGGAGGTTGTGGGTTTTTCCAGTGGTGTGATGCGGTTCAGTCTTCCGGAACTCAGCCAGGTAGCTATGGGAACACTAACGAATCCAAGTTCCCTGATCTCCAGTGCCCGTGTGGTGCTGGATTGTCCCGTGTTCTCACTGCTAAAACTGGGGAAAACATTGGCAGGCAGTTCTATCGCTGTCCTGTTTTTGAGGGCTCCTGTGGTTTCTTCAAATGGTGCAATGATGACGCAGTCCAGTCTCCTAGCTTTACCAAAAGCAGTAACTTAAGTGAATCAGATAACAGAGGATATCAAACTGCAAAGACAGGCAGTGGCACACCCTGTTATAAGTGTGGGAAGGAAGGACATTGGGCAAGAGACTGCACTGCTCAGTCTGGTATTCCCTCGTATGAAACGGGACCGGCAAAGCCTTTCTCTGCAGCTGGAGAATGTTACAAATGCGGGAAGGAAGGGCACTGGGCGAGAGACTGCACTGCTCAATCTGGTAATCCGAAGTCTGGATCAGAACAAGTGAAGCCCTCCTTTTCAGGTGGAGAGTGTTACAAATGTGGGAAGCAAGGACATTGGGCGAGAGACTGCACCGGTCAGTCTGGTAATCAGCAGTTTCAATCATCAGGGCAAGGAAAGCCTGCCTCCTCGGGTGGAGAATGTTACAAATGCGGAAAACCAGGACACTGGGCTAGAGATTGCACTGTGACTGTTCAATCCACAGGCGTTACAGGTAAAAGACAGAGGCAGTACTAG
Protein:  
MEKSTIQVEELDESDDFLLELAAIEAEAEAAAKRPKVAAVPEGPYMAALKGSKSEQWQLNPLNPASKSRGGFQGASVNSNPAGSYGSEAGEQDFPEKKCPCGNGVCSILTSNTQKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTQPGSYGNTNESKFPDLQCPCGAGLSRVLTAKTGENIGRQFYRCPVFEGSCGFFKWCNDDAVQSPSFTKSSNLSESDNRGYQTAKTGSGTPCYKCGKEGHWARDCTAQSGIPSYETGPAKPFSAAGECYKCGKEGHWARDCTAQSGNPKSGSEQVKPSFSGGECYKCGKQGHWARDCTGQSGNQQFQSSGQGKPASSGGECYKCGKPGHWARDCTVTVQSTGVTGKRQRQY